GUANACO

Contents

  • GUANACO Interface
    • Anndata Visualization
      • Data Overview
      • Marker Genes Visualization
        • Heatmap
        • Violin Plot
        • Dot Plot
        • Stacked Bar Plot
        • Pseudotime Plot
      • Subset Exploration
        • Cell Selection
        • Export Selected Subgroup
    • Genome Track Visualization
      • IGV Browser and Motif Dataset
  • Instruction for Using GUANACO
    • Installation
      • Install from Source
        • Step 1. Clone the repository
        • Step 2. Set up a Python environment
        • Step 3. Install GUANACO
        • Step 4. Run GUANACO
      • Install with Docker
        • Step 1. Install Docker
        • Step 2. Run Docker Image
    • Step-by-step Guidance to Run GUANACO
      • Command-line Usage
      • Config File Structure
        • Example Config File
      • Additional Information
        • 1. Track Data Configuration (Formats, URLs, Policies, CORS)
        • 2. Supported genome builds for track-based data
    • Deployment
      • Deployment with System Python
        • Step 1. Clone the repository
        • Step 2. Create a virtual environment
        • Step 3. Install GUANACO
        • Step 4. Run GUANACO
      • Deployment with Docker
        • Step 1. Install Docker
        • Step 2. Run Docker image
GUANACO
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